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3D-ES
I have changed min_software_endstops and max_software_endstops to false,
this is probably not a good idea, I will restore that setting and see what happens.
This did nothing unexpected, the printer behaves correctly.
Host: Pronterface.py (not the exe version) on a Windows Vista machine.
Good luck, mine also had a difficult start, but it is printing like a pro now :)